Josep Lluis Gelpi Buchaca

Josep Lluis Gelpi Buchaca

University Full professor

ORCID: 0000-0002-0566-7723
Scopus Author ID: 35517522400
Researcher ID: M-6401-2013
Knowledge area: Bioquímica i Biologia Molecular

Research group: MODELITZACIÓ MOLECULAR I BIOINFORMÀTICA

Contact Information
Department of Biochemistry and Molecular Biomedicine
C/Diagonal 643
934034009
gelpi(a)ub.edu

Teaching

Responsible for the Bioinformatics section of PhD programme in Biomedicine
Member of the Academic comission in Bioinformatics BSc

Academic Training

Química . Universidad de Barcelona . 1984 . (Diploma / Degree / Activities)
Química . Universitat de Barcelona . 13/07/1990 . (Ph.D.)

Research interests

Methdological development on the prediction of molecular recognition
Integration of biological data. Biological Data Bases
Development of Virtual Research Environments
Evaluation of functional consequences of sequence variants
Study of allosteric regulacion through simulation techniques

Projects

HealthyCloud Health Research & Innovation Cloud (HealthyCloud) . 2021 - 2023 . Ref.965345 . Unió Europea . PI: Karim Lekadir
Training network to advance integrated computational simulations in translational medicine, applied to intervertebral disc degeneration . 2020 - 2024 . Ref.955735 . European Commission . PI: Mariano Vazquez
leveraging the European compute infrastructures for data-intensive research guided by FAIR principles (EuroScienceGateway) . 2022 - 2025 . Ref.101057388 . Unió Europea . PI: Jose Luis Gelpi Buchaca
A European Health Data Toolbox for Enhancing Cardiology Data Interoperability, Reusability and Privacy (DataTools4Heart) . 2022 - 2026 . Ref.101057849 . Unió Europea . PI: Karim Lekadir
European Federation for Cancer Images (EUCAIM) . 2023 - 2026 . Ref.101100633 . Unió Europea . PI: Jose Luis Gelpi Buchaca

Journal Publications

Hospital, A.; Goñi, R.; Orozco, M.; Gelpí, J.L. (2015). Molecular dynamics simulations: advances and applications. Advances and Applications in Bioinformatics and Chemistry, 8, pp. 37 - 47 . https://doi.org/10.2147/AABC.S70333 . ISSN: 1178-6949
ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium: Campbell, PJ; Getz, G; Korbel, JO; Stuart, JM; Jennings, JL; Stein, LD; [...] Rabionet, R; [...] Gelpi, JL; [...] Aymerich, M; Lopez-Guillermo, A; [...] Campo, E; [...] (2020). Pan-cancer analysis of whole genomes. Nature, 578(7793), pp. 82 - 93 . Institutional Repository . ISSN: 0028-0836
Lamprecht, A-L.; Garcia, L.; Kuzak, M.; Martinez, C.; Arcila, R.; Martin Del Pico, E.; Dominguez Del Angel, V.; van de Sandt, S.; Ison, J.; Martinez, P. A.; McQuilton, P.; Valencia, A.; Harrow, J.; Psomopoulos, F.; Gelpi, J.Ll.; Chue Hong, N.; Goble, C.; Capella-Gutierrez, S. (2019). Towards FAIR principles for research software. Data Science . https://doi.org/10.3233/DS-190026 . ISSN: 2451-8484
Buitrago, D.; Codó, L.; Illa, R.; De Jorge, P.; Battistini, F.; Flores, O.; Bayarri, G.; Royo, R.; Del Pino, M.; Heath, S.; Hospital, A.; Gelpí, J.L.; BrunHeath, I.; Orozco, M. (2019). Nucleosome Dynamics: A new tool for the dynamic analysis of nucleosome positioning. Nucleic Acids Research, 47, pp. 9511 - 9523 . Institutional Repository . ISSN: 0305-1048
Hospital, A.; Battistini, F.; Soliva, R.; Gelpi, J.L.; Orozco,M. (2019). Surviving the deluge of biosimulation data. WIREs Computational Molecular Science, e1449 . https://doi.org/10.1002/wcms.1449 . ISSN: 1759-0876
Sati, S.; Bonev, B.; Szabo, Q.; Jost, D.; Bensadoun, P.; Serra, F.; Loubiere, V.; Papadopoulos, G.L.; Rivera-Mulia, J.C.; Frisch, L.; Bouret, P.; Castillo, D.; Gelpi, J.L.; Orozco, M.; Vaillant, C.; Pellestor, f.; Bantignies, F.; Marti-Renom, M.A.; Gilbert, D.M.; Lemaitre, J.M. and Cavalli, G. (2020). 4D Genome rewiring during oncogene-induced and replicative senescende. Molecular Cell, 78(3), pp. 522 - 538 . Institutional Repository . ISSN: 1097-2765
Nadeu, F.; Royo, R.; Massoni-Badosa, R.; Playa-Albinyana, H.; Garcia-Torre, B.; Duran-Ferrer, M.; Dawson, K.J.; Kulis, M.; Diaz-Navarro, A.; Villamor, N.; Melero, J.L.; Chapaprieta, V.; Dueso-Barroso, A.; Delgado, J.; Moia, R.; Ruiz-Gil, S.; Marchese, D.; Giró, A.; Verdaguer-Dot, N.; Romo, M.; Clot, G.; Rozman, M.; Frigola, G.; Rivas-Delgado, A.; Baumann, T.; Alcoceba, M.; González, M.; Climent, F.; Abrisqueta, P.; Castellví, J.; Bosch, F.; Aymerich, M.; Enjuanes, A.; Ruiz-Gaspà, S.; López-Guillermo, A.; Jares, P.; Beà, S.; Capella-Gutierrez, S.; Gelpí, J.L.; López-Bigas, N.; Torrents, D.; Campbell, P.J.; Gut, I.; Rossi, D.; Gaidano, G.; Puente, X.S.; Garcia-Roves, P.M.; Colomer, D.; Heyn, H.; Maura, F.; Martín-Subero, J.I.; Campo, E. (2022). Detection of early seeding of Richter transformation in chronic lymphocytic leukemia. Nature Medicine . https://doi.org/10.1038/s41591-022-01927-8 . ISSN: 1078-8956
Bayarri, G.; Andrio, P.; Hospital, A.; Orozco, M. and Gelpí, J.L. (2022). BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based plartform for biomolecular simulations. Nucleic Acids Research, 50(W1), pp. W99 - W107 . Institutional Repository . ISSN: 0305-1048
Yakneen, S; Waszak, SM; PCAWG Technical Working Group; Gertz, M; Korbel, JO; PCAWG Consortium (2020). Butler enables rapid cloud-based analysis of thousands of human genomes. Nature Biotechnology, 38, pp. 288 - 292 . Institutional Repository . ISSN: 1087-0156

Others Publications

Sfriso, P.; Emperador, A.; Gelpí, J.L.; Orozco, M. (2014). Discrete Molecular Dynamics . In Computational Approaches to Protein Dynamics: From Quantum to Coarse-Grained Methods . (pp. 339 - 360) . CRC Press . ISBN: 978-1-4822-9786-7 .