Pedro Ramón de Atauri Carulla

Senior lecturer

Scopus Author ID: 6603151649

Researcher ID: AAG-2384-2020

Knowledge area: Bioquímica i Biologia Molecular

Research group: Grup de Bioquímica Integrativa

Teaching Innovation Groups: Metabolisme al grau de Química (QuiMet)

Contact Information
Department of Biochemistry and Molecular Biomedicine
Avinguda Diagonal 643 Edifici Prevosti, Departament de Bioquímica i Biomedicina Molecular (planta -2)
934033747
pde_atauri(a)ub.edu

Teaching

Biochemistry (Chemistry degree)

Biologia II (laboratori of chemistry; Biotecnology degree)

Computational Systems Biology (master 'Modelización Computacional Atomística y Multiescala en Física, Química i Bioquímica')

Computational Systems Biology (master 'Bioinformàtica para las ciencias de la salud')

Coordinador pràctiques de laboratori químic: Laboratori 1 (Grau Bioquímica), Biologia II (Graus Biotecnologia i Biologia) i Laboratori i Instrumentació Biomèdica (Grau Ciències Biomèdiques)

Academic Training

Ciencias Biológicas . Universidad de Barcelona . 20/07/1990 . (Diploma / Degree / Activities)

Ciencias Biológicas . Universidad de Barcelona . 24/07/2001 . (Ph.D.)

Research interests

Computational Systems Biology (ODE models, Metabolic Control Analysis, 13C Metabolic Flux Analysis, Genome-Scale Metabolic Models)

Journal Publications

de Atauri, P.; Benito, A.; Vizán, P.; Zanuy, M.; Mangues, R.; Marín, S.; Cascante, M. (2011). Carbon metabolism and the sing of control coefficients in metabolic adaptations underlying K-ras transformation. BBA - Bioenergetics, 1807(6), pp. 746 - 754 . ISSN: 0005-2728

Ramírez-Bajo, M.J.; de Atauri, P.; Ortega, F.; Westerhoff, H.V.; Gelpí, J.L.; Centelles, J.J.; Cascante, M. (2014). Effects of Cadmium and mercury on the upper part of skeletal muscle glycolysis in mice. PLoS One, 9(1), p. e80018 . Institutional Repository . ISSN: 1932-6203

de Atauri P.; Tarrado-Castellarnau M.; Tarragó-Celada J.; Foguet C.; Karakitsou E.; Centelles J.J.; Cascante M. (2021). Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations. PLoS Computational Biology, 17(7), p. e1009234 . Institutional Repository . ISSN: 1553-734X

Través, P.G.; De Atauri, P.; Marín, S.; Pimentel-Santillana, M.; Rodríguez-Prados, J.C.; Marín-de-Mas, I.; Selivanov, V.A.; Martín-Sanz, P.; Boscá, L.; Cascante, M. (2012). Relevance of the MEK/ERK signaling pathway in the metabolism of activated Macrophages: a metabolomic approach. Journal of Immunology, 188(3), pp. 1402 - 1410 . https://doi.org/10.4049/jimmunol.1101781 . ISSN: 0022-1767

Binns, M.; de Atauri, P.; Vlysidis, A.; Cascante, M.; Theodoropoulos, C. (2015). Sampling with poling-based flux balance analysis: optimal versus sub-optimal flux space analysis of Actinobacillus succinogenes. BMC Bioinformatics, 16(49) . Institutional Repository . ISSN: 1471-2105

Tényi, Á.; de Atauri, P.; Gomez-Cabrero, D.; Cano, I.; Clarke, K.; Falciani, F.; Cascante, M.; Roca, J.; Maier, D. (2016). ChainRank, a chain prioritisation method for contextualisation of biological networks. BMC Bioinformatics, 17(1), pp. 1 - 17 . Institutional Repository . ISSN: 1471-2105

Foguet, C.; Marin, S.; Selivanov, V.A.; Fanchon, E.; Lee, W.N.; Guinovart, J.J.; de Atauri, P.; Cascante, M. (2016). HepatoDyn: a dynamic model of hepatocyte metabolism that integrates 13C isotopomer data. PLoS Computational Biology, 12(4), p. e1004899 . Institutional Repository . ISSN: 1553-734X

Tarrado-Castellarnau, M.; de Atauri, P.; Cascante, M. (2016). Oncogenic regulation of tumor metabolic reprogramming. Oncotarget, 7(38), pp. 62726 - 62753 . Institutional Repository . ISSN: 1949-2553

Tarrado-Castellarnau, M.; de Atauri, P.; Tarragó-Celada, J.; Perarnau, J.; Yuneva, M.; Thomson T.M.; Cascante, M. (2017). De novo MYC addiction as an adaptive response of cancer cells to CDK4/6 inhibition. Molecular Systems Biology, 13(10), p. 940 . Institutional Repository . ISSN: 1744-4292

Foguet, C.; Jayaraman, A.; Marin, S.; Selivanov, V.A.; Moreno,P.; Messeguer, R.; De Atauri, P; Cascante, M. (2019). p13CMFA: Parsimonious 13C metabolic flux analysis. PLoS Computational Biology, 15(9), p. e1007310 . Institutional Repository . ISSN: 1553-734X

Others Publications

Cascante, M.; Benito, A.; Marin de Mas, I.; Centelles, J.J.; Miranda, A.; de Atauri, P. (2014). Chapter 12: Fluxomic . In A systems Biology Approach to Study Metabolic Syndrome. . Volume. XIX . (pp. 237 - 250) . Springer . ISBN: 978-3-319-01007-6 . http://www.springer.com/978-3-319-01007-6